STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3393PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative. (172 aa)    
Predicted Functional Partners:
Pnap_0888
PFAM: electron transport protein SCO1/SenC; KEGG: pol:Bpro_1255 electron transport protein SCO1/SenC.
 
 
 0.856
Pnap_3394
KEGG: pol:Bpro_1097 hypothetical protein.
   
   0.812
Pnap_2939
PFAM: Redoxin domain protein; KEGG: pol:Bpro_2908 thiol-disulfide isomerase and thioredoxins-like.
  
     0.774
Pnap_0584
TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE.
 
   
 0.648
Pnap_2401
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 0.645
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
  
 
 0.576
Pnap_2357
PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein.
  
     0.567
Pnap_2512
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein.
  
 
 0.537
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.535
mpl
UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.512
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.