STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3439PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: eca:ECA3767 probable short-chain dehydrogenase. (235 aa)    
Predicted Functional Partners:
Pnap_3438
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4389 uncharacterized protein UPF0065.
       0.794
nagB
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
  
     0.765
Pnap_3988
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.740
Pnap_1113
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3788 short-chain dehydrogenase/reductase SDR.
  
     0.723
Pnap_3437
PFAM: dihydrodipicolinate synthetase; KEGG: mta:Moth_0631 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
 0.706
Pnap_3440
PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_0843 mandelate racemase/muconate lactonizing enzyme.
     
 0.702
Pnap_0841
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1762 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.628
Pnap_3017
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3587 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.612
Pnap_3235
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR.
  
     0.612
Pnap_0518
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR.
  
     0.591
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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