STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3441PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like. (544 aa)    
Predicted Functional Partners:
Pnap_2903
KEGG: pol:Bpro_2871 hypothetical protein.
 
     0.734
Pnap_3957
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family.
  
     0.676
Pnap_1815
ZipA, C-terminal FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.642
Pnap_0856
PFAM: protein of unknown function DUF490; KEGG: pol:Bpro_1217 protein of unknown function DUF490.
  
   
 0.602
Pnap_3883
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.586
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
    0.586
Pnap_3722
PFAM: SEC-C motif domain protein; KEGG: pol:Bpro_4482 sec-C motif.
 
     0.578
Pnap_1848
KEGG: pol:Bpro_2563 putative glutathione S-transferase-related protein.
  
 
 
 0.571
Pnap_3440
PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_0843 mandelate racemase/muconate lactonizing enzyme.
       0.512
Pnap_3087
PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein.
 
     0.509
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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