STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3461PFAM: regulatory protein, MerR; KEGG: pfu:PF1985 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Pnap_3462
Hypothetical protein.
  
  
 0.796
Pnap_3463
PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily.
       0.648
Pnap_1699
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease.
  
     0.639
Pnap_2077
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease.
  
     0.634
Pnap_3460
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related.
       0.553
Pnap_3173
Transposase; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: ecc:c3804 hypothetical protein YdcM.
 
  
 0.491
Pnap_3464
PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_2532 MgtC/SapB transporter.
       0.440
Pnap_3261
KEGG: gvi:glr0982 hypothetical protein.
  
     0.439
Pnap_2764
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB.
 
  
 0.431
Pnap_3880
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB.
 
  
 0.426
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.