STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3480Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rme:Rmet_2723 polysaccharide biosynthesis protein CapD. (655 aa)    
Predicted Functional Partners:
Pnap_3481
PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase.
  
 0.923
Pnap_3116
PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY.
  
 0.902
Pnap_3118
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sat:SYN_01128 nucleotide-sugar aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.899
Pnap_3482
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase.
 
  
 0.825
Pnap_3192
Mannose-6-phosphate isomerase, type 2; KEGG: pfl:PFL_5483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.778
Pnap_3132
TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein.
 
  
 0.763
Pnap_3194
TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein.
 
  
 0.761
Pnap_1585
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.754
Pnap_3126
PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pae:PA3155 probable aminotransferase WbpE; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.741
Pnap_3483
PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2727 glycosyl transferase, group 1.
 
  
 0.580
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.