STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3496PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family. (223 aa)    
Predicted Functional Partners:
Pnap_3497
KEGG: pol:Bpro_4026 hypothetical protein.
 
 
 
 0.928
Pnap_3495
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated.
 
     0.873
Pnap_3494
Male sterility C-terminal domain protein; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4023 male sterility-like.
 
   
 0.763
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
     0.617
Pnap_3510
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_4042 protein of unknown function UPF0089.
  
   
 0.572
Pnap_1357
KEGG: pol:Bpro_3339 hypothetical protein.
  
     0.554
Pnap_0434
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase.
  
  
 0.525
Pnap_0301
KEGG: pol:Bpro_0444 hypothetical protein.
  
     0.517
Pnap_3083
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region.
  
     0.486
Pnap_1815
ZipA, C-terminal FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
   
 0.447
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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