STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3501KEGG: pol:Bpro_4033 putative zinc protease protein. (374 aa)    
Predicted Functional Partners:
Pnap_3503
TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: rfr:Rfer_3533 hypothetical protein.
      0.671
Pnap_3499
PFAM: conserved hypothetical protein 374; KEGG: pol:Bpro_4029 conserved hypothetical protein 374.
       0.552
Pnap_3500
PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_4030 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
       0.552
Pnap_0435
KEGG: pol:Bpro_4221 putative lipase transmembrane protein.
 
     0.511
Pnap_1870
KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.426
Pnap_2563
Periplasmic lipoprotein-like protein; KEGG: rsp:RSP_1544 hypothetical signal peptide protein.
  
     0.403
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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