STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3507PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase. (130 aa)    
Predicted Functional Partners:
Pnap_3505
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4036 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
    0.794
Pnap_3506
hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase.
     
 0.783
Pnap_2140
PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD.
 
    0.719
Pnap_3508
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4039 uncharacterized protein UPF0065.
       0.678
Pnap_2143
KEGG: pol:Bpro_0584 hypothetical protein.
  
    0.668
Pnap_3504
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4035 transcriptional regulator, LysR family.
       0.661
Pnap_3503
TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: rfr:Rfer_3533 hypothetical protein.
       0.612
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
  
 0.452
Pnap_2139
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.449
Pnap_3029
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.449
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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