STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3538PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme. (400 aa)    
Predicted Functional Partners:
Pnap_3537
PFAM: extracellular solute-binding protein, family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein.
     0.921
Pnap_3536
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein.
 
    0.697
Pnap_3533
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4072 ABC transporter ATP-binding protein.
 
     0.683
Pnap_3535
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter, permease protein DppC, putative.
  
    0.654
Pnap_3534
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein.
  
    0.643
Pnap_1597
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase.
 
   
 0.600
Pnap_1130
D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase.
  
   
 0.570
Pnap_3539
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bcn:Bcen_0685 GntR-like.
 
   
 0.531
Pnap_1599
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3103 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.476
Pnap_2119
Muconate cycloisomerase; KEGG: rme:Rmet_4878 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
  
     0.464
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.