STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3541KEGG: pfo:Pfl_1041 ATPase-like. (426 aa)    
Predicted Functional Partners:
Pnap_3540
KEGG: pfo:Pfl_1042 hypothetical protein.
 
     0.952
Pnap_1211
KEGG: tdn:Tmden_0240 conserved hypothetical protein, putative DNA helicase.
  
    0.598
Pnap_3542
PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_0650 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.
       0.561
Pnap_2899
KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class.
  
  
 0.538
Pnap_2902
KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class.
  
  
 0.538
Pnap_1136
PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein.
 
  
 0.475
Pnap_0165
KEGG: bja:blr1916 putative transposase.
  
  
 0.407
Pnap_0428
Hypothetical protein; KEGG: nha:Nham_3929 putative transposase.
  
  
 0.407
Pnap_0541
KEGG: bja:blr1916 putative transposase.
  
  
 0.407
Pnap_0594
KEGG: bja:blr1916 putative transposase.
  
  
 0.407
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.