STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3572KEGG: pol:Bpro_1655 hypothetical protein. (196 aa)    
Predicted Functional Partners:
nodI
ABC transporter related protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
       0.553
Pnap_3574
TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family.
       0.553
Pnap_0313
PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein.
  
     0.524
Pnap_3570
PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_0636 MscS mechanosensitive ion channel.
       0.495
purT
Formate-dependent phosphoribosylglycinamide formyltransferase; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.495
Pnap_2946
KEGG: pol:Bpro_1626 hypothetical protein.
  
     0.478
Pnap_1828
KEGG: bxe:Bxe_B0552 hypothetical protein.
  
     0.432
Pnap_2911
Tfp pilus assembly protein PilW-like protein; KEGG: bps:BPSL2754 putative membrane protein.
  
     0.420
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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