STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodIABC transporter related protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. (313 aa)    
Predicted Functional Partners:
Pnap_3574
TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family.
 
 
 0.993
Pnap_1840
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related; TC 3.A.1.4.-.
    
0.904
Pnap_3550
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214.
 
    
 0.556
Pnap_3572
KEGG: pol:Bpro_1655 hypothetical protein.
       0.553
Pnap_0692
PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2.
  
 0.515
Pnap_3575
PFAM: CheB methylesterase; KEGG: eba:ebA2148 chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase.
  
    0.485
Pnap_3110
PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal.
  
 
   0.444
Pnap_2637
PFAM: FMN-binding domain protein; KEGG: sil:SPO1521 regulatory protein, putative.
  
  
 0.420
Pnap_3961
KEGG: sil:SPO1521 regulatory protein, putative.
  
  
 0.420
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
  
    0.418
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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