STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3594PFAM: PGAP1 family protein; KEGG: rfr:Rfer_3545 PGAP1-like. (449 aa)    
Predicted Functional Partners:
Pnap_3494
Male sterility C-terminal domain protein; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4023 male sterility-like.
 
   
 0.817
Pnap_3510
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_4042 protein of unknown function UPF0089.
  
     0.772
Pnap_3497
KEGG: pol:Bpro_4026 hypothetical protein.
 
     0.639
Pnap_3495
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated.
  
     0.634
Pnap_3509
PFAM: acyl-coA-binding protein, ACBP; KEGG: pol:Bpro_4041 acyl-coA-binding protein, ACBP.
  
     0.536
Pnap_3595
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu.
       0.487
Pnap_1705
KEGG: pol:Bpro_2302 hypothetical protein.
  
   
 0.444
Pnap_2541
PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region.
 
     0.437
Pnap_3496
PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family.
  
   
 0.425
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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