STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3622PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0588 thioesterase superfamily. (146 aa)    
Predicted Functional Partners:
Pnap_3623
PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP.
 
     0.942
Pnap_3621
PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0589 benzoate-CoA ligase family.
 
  
 0.937
Pnap_0799
PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase.
  
  
  0.935
Pnap_3619
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_0591 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
    0.927
Pnap_3618
PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0592 transcriptional regulator, MarR family.
 
     0.923
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
     
 0.904
Pnap_3620
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0590 acyl-CoA dehydrogenase-like.
 
   
 0.902
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
     
  0.900
Pnap_3617
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: pol:Bpro_0593 NADH:flavin oxidoreductase/NADH oxidase.
 
  
 0.896
Pnap_2460
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: pol:Bpro_0986 extracellular ligand-binding receptor; TC 3.A.1.4.-.
  
     0.538
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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