STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3658PFAM: cytochrome B561; KEGG: par:Psyc_2075 putative nickel-dependent hydrogenase cytochrome b-type subunit. (179 aa)    
Predicted Functional Partners:
Pnap_3659
KEGG: psp:PSPPH_3452 hypothetical protein.
 
     0.915
Pnap_0216
PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II.
 
    0.690
Pnap_3657
PFAM: Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase.
       0.594
Pnap_0569
PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor.
 
    0.517
Pnap_3660
PFAM: ribulose-phosphate 3-epimerase; KEGG: pol:Bpro_4466 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.468
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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