STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3700PFAM: PsiF repeat protein; KEGG: reu:Reut_A0351 PsiF. (114 aa)    
Predicted Functional Partners:
argS
KEGG: pol:Bpro_4490 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
       0.608
Pnap_1755
PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM.
  
    0.574
Pnap_3702
PFAM: Sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related.
       0.571
Pnap_0647
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.485
Pnap_0032
PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328.
  
   
 0.477
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.