STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3770PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0400 transcriptional regulator, AsnC family. (141 aa)    
Predicted Functional Partners:
Pnap_3771
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rfr:Rfer_3883 ornithine cyclodeaminase.
 
   
 0.842
Pnap_3772
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase; Belongs to the arginase family.
 
     0.725
Pnap_3888
PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family.
  
     0.715
Pnap_3221
PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family.
  
     0.706
Pnap_3769
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: pol:Bpro_4600 DNA polymerase III, delta subunit.
       0.705
Pnap_0535
PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0674 transcriptional regulator, AsnC family.
  
     0.558
Pnap_4070
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.505
Pnap_1031
PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1437 FAD dependent oxidoreductase.
 
     0.459
Pnap_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: pol:Bpro_0791 glutamate synthase (ferredoxin).
     
 0.439
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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