STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3805Methylitaconate delta2-delta3-isomerase; PFAM: Uncharacterized protein UPF0065; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453. (707 aa)    
Predicted Functional Partners:
Pnap_2029
PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2.
  
 0.774
Pnap_1548
PFAM: amidohydrolase 2; KEGG: bja:blr2258 putative 2-pyrone-4,6-dicarbaxylate hydrolase.
 
  
 0.724
Pnap_2032
4-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2.
 
  
 0.724
Pnap_3024
Aconitase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: pol:Bpro_3592 aconitate hydratase 1.
  
  
 0.710
Pnap_2031
4-carboxy-4-hydroxy-2-oxoadipate aldolase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.
 
   
 0.706
Pnap_3732
PFAM: restriction endonuclease; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease.
   
  
 0.658
Pnap_2165
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding.
 
    0.610
Pnap_0600
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03175 putative transferase protein.
 
   
 0.598
Pnap_3804
Hypothetical protein.
       0.569
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.561
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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