STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3810PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (279 aa)    
Predicted Functional Partners:
Pnap_3029
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.928
Pnap_3809
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4555 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
 0.915
Pnap_2139
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.906
Pnap_3808
KEGG: pol:Bpro_4554 hypothetical protein.
 
  
 0.814
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.787
Pnap_0948
PFAM: malonate decarboxylase delta subunit; KEGG: reu:Reut_B4927 malonate decarboxylase delta subunit.
  
  
 0.700
Pnap_3811
3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_4557 fumarate lyase.
       0.693
Pnap_2141
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
 0.665
Pnap_2140
PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD.
  
 0.660
Pnap_3807
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4553 uncharacterized protein UPF0065.
       0.628
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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