STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3822KEGG: rme:Rmet_3878 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Pnap_3823
Hypothetical protein; KEGG: mca:MCA0458 cysteine rich repeat domain protein, putative.
       0.757
Pnap_3824
Hypothetical protein.
       0.757
Pnap_3826
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bps:BPSL1037 putative two-component system, sensor kinase.
  
   0.553
Pnap_3825
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family.
  
    0.543
Pnap_3617
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase, FAD-binding; KEGG: pol:Bpro_0593 NADH:flavin oxidoreductase/NADH oxidase.
   
 
 0.485
Pnap_3821
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1.
       0.462
Pnap_3730
KEGG: pol:Bpro_4477 hypothetical protein.
  
     0.440
Pnap_1372
PFAM: phosphoesterase, PA-phosphatase related; KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related.
  
 
 0.410
Pnap_2961
PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2018 squalene/phytoene synthase.
  
 
 0.410
Pnap_2964
Farnesyl-diphosphate farnesyltransferase; PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase.
  
 
 0.410
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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