STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3832PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein. (280 aa)    
Predicted Functional Partners:
Pnap_3535
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter, permease protein DppC, putative.
 
 0.999
Pnap_3831
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_870 putative dipeptide transport system permease ABC transporter protein.
 
 0.999
Pnap_3830
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5514 ABC transporter, permease protein.
 0.998
Pnap_3829
PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc01525 putative dipeptide binding periplasmic protein.
 
 
 0.995
Pnap_3536
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein.
 0.993
Pnap_3537
PFAM: extracellular solute-binding protein, family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein.
 
 
 0.984
Pnap_2015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2422 binding-protein-dependent transport systems inner membrane component.
   
 0.973
Pnap_1154
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related.
 
    
0.905
lolD-2
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
0.905
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
0.904
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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