STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3839KEGG: eba:ebA5757 conserved hypothetical protein, possibly involved in regulation of phenolics degradation. (298 aa)    
Predicted Functional Partners:
Pnap_3838
4-cresol dehydrogenase (hydroxylating); PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA3165 probable p-cresol methylhydroxylase subunit.
  
    0.679
Pnap_3840
PFAM: peptidase M19, renal dipeptidase; KEGG: hypothetical protein.
       0.661
Pnap_3837
KEGG: noc:Noc_2407 hypothetical protein.
       0.648
Pnap_2208
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
  
     0.626
Pnap_3836
KEGG: eba:ebB97 probable p-cresol methylhydroxylase subunit.
       0.624
Pnap_3841
PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4578 thioesterase superfamily.
       0.571
Pnap_3835
PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
       0.524
Pnap_2389
PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A.
  
     0.458
Pnap_3521
PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; TC 3.A.1.4.-.
  
     0.451
Pnap_3519
Branched-chain amino acid transport system ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit; TC 3.A.1.4.-; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
  
     0.422
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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