STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3853KEGG: rfr:Rfer_3307 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Pnap_3854
PFAM: iron permease FTR1; KEGG: rfr:Rfer_3306 iron permease FTR1.
 
   
 0.934
Pnap_1326
KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; Belongs to the multicopper oxidase family.
   
 
 0.558
Pnap_3852
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent).
       0.519
Pnap_1261
PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal.
   
 
 0.406
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.