STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3857TIGRFAM: esterase, PHB depolymerase family; KEGG: pol:Bpro_2065 esterase, PHB depolymerase. (414 aa)    
Predicted Functional Partners:
Pnap_3858
KEGG: pol:Bpro_2066 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain.
 
     0.916
Pnap_1238
PFAM: Fibronectin, type III domain protein; KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase.
 
     0.867
Pnap_2543
PFAM: metallophosphoesterase; KEGG: rfr:Rfer_2358 metallophosphoesterase.
  
     0.468
Pnap_0594
KEGG: bja:blr1916 putative transposase.
  
     0.434
Pnap_0541
KEGG: bja:blr1916 putative transposase.
  
     0.429
Pnap_1744
KEGG: bja:blr1916 putative transposase.
  
     0.429
Pnap_0165
KEGG: bja:blr1916 putative transposase.
  
     0.428
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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