STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3859PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein. (77 aa)    
Predicted Functional Partners:
Pnap_1991
PFAM: phage integrase family protein; KEGG: rfr:Rfer_2261 phage integrase; Belongs to the 'phage' integrase family.
  
     0.589
Pnap_2770
KEGG: pol:Bpro_1829 membrane protein-like.
  
     0.552
Pnap_3860
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0371 extracellular ligand-binding receptor; TC 3.A.1.4.-.
       0.543
Pnap_1008
KEGG: pol:Bpro_1418 hypothetical protein.
  
     0.540
Pnap_0932
PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_0891 cupin 2, conserved barrel.
  
     0.472
Pnap_3858
KEGG: pol:Bpro_2066 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain.
       0.462
Pnap_0374
KEGG: pol:Bpro_4259 putative lipoprotein.
  
     0.447
Pnap_0779
PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein.
  
    0.446
Pnap_1007
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related.
  
     0.437
Pnap_1990
KEGG: rfr:Rfer_2260 hypothetical protein.
  
     0.434
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.