STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3872KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like. (267 aa)    
Predicted Functional Partners:
Pnap_1228
PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase.
 
   
 0.763
Pnap_3883
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.625
Pnap_3870
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4631 histidine kinase.
     
 0.587
Pnap_3871
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4632 two component transcriptional regulator, winged helix family.
       0.565
Pnap_3495
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated.
  
     0.543
Pnap_2563
Periplasmic lipoprotein-like protein; KEGG: rsp:RSP_1544 hypothetical signal peptide protein.
  
     0.460
Pnap_2545
PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541.
  
     0.418
Pnap_3942
PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase.
 
   
 0.413
Pnap_0306
PFAM: domain of unknown function DUF1745; KEGG: pol:Bpro_0450 hypothetical protein.
  
     0.411
Pnap_0406
TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1046 protein of unknown function DUF11.
  
     0.410
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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