STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3881TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pol:Bpro_4641 DNA processing protein DprA, putative. (399 aa)    
Predicted Functional Partners:
Pnap_0119
Mg chelatase, subunit ChlI; KEGG: pol:Bpro_0181 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
 0.908
Pnap_1205
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pol:Bpro_3158 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.887
Pnap_0875
KEGG: pol:Bpro_1242 hypothetical protein.
 
 
 0.874
Pnap_3880
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB.
       0.773
smg
PFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494; Belongs to the Smg family.
     
 0.714
Pnap_0271
PFAM: protein of unknown function UPF0102; KEGG: pol:Bpro_0391 protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
    0.621
Pnap_0768
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.589
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
  
  
 0.578
Pnap_3879
PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
       0.571
Pnap_3819
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.569
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.