STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgPFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494; Belongs to the Smg family. (171 aa)    
Predicted Functional Partners:
Pnap_3881
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pol:Bpro_4641 DNA processing protein DprA, putative.
     
 0.714
Pnap_3880
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB.
       0.693
zapD
Protein of unknown function DUF1342; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.603
Pnap_3879
PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
 
     0.559
Pnap_2003
PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125; Belongs to the UPF0125 (RnfH) family.
  
     0.462
Pnap_3752
KEGG: pol:Bpro_4585 hypothetical protein.
  
     0.405
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.