STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3899PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family. (247 aa)    
Predicted Functional Partners:
Pnap_3900
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT.
 
   
 0.828
Pnap_3901
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.760
Pnap_3902
PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.669
Pnap_4013
PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: pfl:PFL_2820 outer membrane protein, OMP85 family.
  
     0.562
glnE
(Glutamate--ammonia-ligase) adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal tra [...]
     
 0.533
Pnap_0575
PFAM: protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction.
  
     0.476
Pnap_0863
KEGG: pol:Bpro_1227 hypothetical protein.
  
     0.468
Pnap_3903
Hypothetical protein.
       0.465
Pnap_3897
KEGG: pol:Bpro_4655 hypothetical protein.
 
     0.459
Pnap_0574
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 protein of unknown function DUF1501.
  
     0.447
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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