STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3907PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4458 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Pnap_3237
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane.
 
  
 0.838
Pnap_1236
PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane.
 
  
 0.836
Pnap_3908
Maleylacetate reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase.
       0.773
Pnap_3238
PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468.
 
  
 0.552
Pnap_3906
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV4290 probable transcriptional regulator LysR-family.
       0.545
Pnap_3909
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6140 zinc-containing alcohol dehydrogenase superfamily.
       0.526
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.