STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3945PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; Belongs to the N-Me-Phe pilin family. (166 aa)    
Predicted Functional Partners:
Pnap_3946
PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; Belongs to the N-Me-Phe pilin family.
 
  
 
0.948
Pnap_3944
PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; Belongs to the N-Me-Phe pilin family.
  
  
 
0.901
Pnap_0676
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein.
 
   
 0.770
Pnap_0672
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
   
 0.680
Pnap_3879
PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM.
  
     0.590
Pnap_0674
PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
  
   
 0.589
Pnap_1218
PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58.
  
     0.556
Pnap_1217
PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like.
  
     0.511
Pnap_0768
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.490
Pnap_2909
Pilus assembly protein; KEGG: pol:Bpro_2877 methylation.
 
   
 0.474
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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