STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3961KEGG: sil:SPO1521 regulatory protein, putative. (743 aa)    
Predicted Functional Partners:
Pnap_3962
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
  
 0.941
Pnap_1328
Nitric oxide reductase, NorZ apoprotein; KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein.
  
  
 0.897
Pnap_1976
PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO.
  
  
 0.819
Pnap_0736
KEGG: reu:Reut_A1777 cytochrome c-type protein.
 
  
 0.813
Pnap_2638
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
  
 0.736
Pnap_0721
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein.
 
  
 0.730
Pnap_0726
PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_A1784 pyrrolo-quinoline quinone.
 
     0.717
Pnap_0737
Amino acid ABC transporter substrate-binding protein, PAAT family; SMART: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A1776 extracellular solute-binding protein, family 3; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
  
    0.698
Pnap_2642
PFAM: Sel1 domain protein repeat-containing protein; KEGG: gox:GOX0713 hypothetical protein.
  
     0.643
Pnap_3779
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.612
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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