STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3986PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease. (276 aa)    
Predicted Functional Partners:
Pnap_1064
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403.
 
  
 0.857
Pnap_1206
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404.
 
    0.803
Pnap_1207
PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403.
 
  
 0.793
Pnap_1061
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_0967 transglutaminase-like.
 
     0.777
Pnap_1063
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pfl:PFL_0589 transglutaminase domain protein.
 
     0.775
Pnap_1065
PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rru:Rru_A2558 transglutaminase-like.
 
     0.698
Pnap_1358
PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_3338 20S proteasome, A and B subunits.
 
    0.514
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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