Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_00050Restriction-modification system, predicted endonuclease-like protein. (527 aa)    
Predicted Functional Partners:
Rta_00060
Restriction-modification system, predicted endonuclease-like protein.
     0.989
Rta_00040
Restriction-modification system, predicted methylase-like protein.
 
   
 0.953
cobB
NAD-dependent protein deacetylase, SIR2 family-like protein; Belongs to the sirtuin family. Class III subfamily.
   
    0.691
Rta_15950
(NAD(+) diphosphorylase) (NMN adenylyltransferase); ADP compounds hydrolase.
   
    0.685
Rta_25840
Conserved hypothetical protein.
   
    0.685
Rta_34110
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.615
gyrB
Candidate DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.432
Rta_24380
Lactoylglutathione lyase (Methylglyoxalase)-like protein; (Aldoketomutase) (Glyoxalase I).
   
    0.412
Rta_27410
PhnB protein-like protein.
   
    0.412
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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