Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_00210Taurine dioxygenase-like protein. (274 aa)    
Predicted Functional Partners:
tctC
Candidate extracytoplasmic binding receptor.
       0.625
Rta_30410
Polyketide synthase-like protein.
  
  
 0.538
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
  
  
 0.517
Rta_21630
Gamma-butyrobetaine, 2-oxoglutarate dioxygenase (Gamma-butyrobetaine hydroxylase)-like protein.
  
     0.497
Rta_01500
Conserved hypothetical protein.
  
     0.487
yagT
Candidate xanthine dehydrogenase yagT iron-sulfur binding subunit.
       0.436
Rta_00240
4-hydroxybenzoyl-CoA reductase-like protein.
       0.436
Rta_00250
Xanthine dehydrogenase-like protein.
       0.436
Rta_16750
Candidate terephthalate 1,2-dioxygenase oxygenase component large subunit.
  
     0.430
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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