Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Rta_00410Candidate membrane protein. (342 aa)    
Predicted Functional Partners:
Rta_00430
Hypothetical protein.
 
  
 0.939
ybhO
CL synthase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
 
  
 0.906
nptA
Candidate Na+/phosphate symporter.
 
     0.595
Rta_34440
Candidate b-glucosyltransferase MdoH, Glycosyltransferase Family 2.
 
     0.549
Rta_00190
Candidate transporter.
  
   
 0.538
Rta_31120
Conserved hypothetical protein.
 
  
 0.509
Rta_34880
Outer membrane usher protein-like protein.
  
     0.508
Rta_05940
Candidate transporter.
  
   
 0.506
Rta_14920
Conserved hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
     0.497
Rta_26990
Candidate membrane protein GlpM.
  
     0.479
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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