Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_00500Conserved hypothetical protein. (167 aa)    
Predicted Functional Partners:
xseB
Candidate exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.933
Rta_15340
Hypothetical protein.
  
     0.754
Rta_28650
HemY protein-like protein.
 
     0.730
Rta_37460
Transcriptional regulator, MarR family-like protein.
  
     0.698
Rta_37070
Conserved hypothetical protein.
  
     0.691
Rta_18620
Glutaredoxin-like protein.
  
     0.653
Rta_36560
Conserved hypothetical protein.
  
     0.606
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
  
     0.583
lolB
Candidate Outer-membrane lipoprotein lolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
     0.574
holB
Candidate DNA polymerase III, delta prime subunit.
  
   
 0.557
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.