Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_00580Transcriptional regulator, AraC family-like protein. (283 aa)    
Predicted Functional Partners:
Rta_04050
Transcriptional regulator, AraC family-like protein.
  
     0.735
Rta_00590
Conserved hypothetical protein.
 
 
 
 0.655
Rta_30980
Transcriptional regulator, AraC family-like protein.
  
     0.516
Rta_29540
Transcriptional regulator, AraC family-like protein.
 
 
 0.515
Rta_04160
Transcriptional regulator, AraC family-like protein.
  
     0.500
Rta_02160
Transcriptional regulator, AraC family-like protein.
  
     0.476
Rta_26040
Transcriptional regulator, XRE family-like protein.
  
    0.451
Rta_04030
Transcriptional regulator, DeoR family-like protein.
 
     0.423
Rta_01910
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
    0.410
Rta_30100
Conserved hypothetical protein.
  
  
 0.405
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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