Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_00620Candidate flavoprotein NADH-dependent oxidoreductase. (369 aa)    
Predicted Functional Partners:
Rta_00600
Candidate histidine kinase, classic.
  
    0.670
Rta_00610
Candidate response regulator, OmpR.
       0.668
Rta_25190
Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit).
  
 
 0.652
Rta_18430
Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase)-like protein.
    
 0.604
Rta_00630
Candidate transporter.
  
    0.534
Rta_25180
Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit).
   
 
 0.478
rpsA
Candidate 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.442
tuf
Candidate Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.413
tuf-2
Candidate elongation factor Tu.
   
  
 0.413
kynA
Vermilion protein; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
     
 0.411
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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