Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
vapCHypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (139 aa)    
Predicted Functional Partners:
Rta_00710
Antitoxin of toxin-antitoxin stability system-like protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
    0.804
gidA
Candidate glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.804
Rta_08520
Transcriptional regulator, LuxR family-like protein.
  
     0.746
Rta_38110
Phosphoglycolate phosphatase-like protein.
  
     0.640
Rta_08500
Candidate response regulator, atypical CheY.
  
     0.631
Rta_24290
Conserved hypothetical protein.
  
     0.624
gidB
Candidate glucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.607
Rta_00700
Conserved hypothetical protein.
       0.561
Rta_00560
Hypothetical protein.
  
     0.520
dsbG
Candidate Thiol:disulfide interchange protein dsbG precursor.
  
     0.512
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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