Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dldCandidate D-lactate dehydrogenase (cytochrome). (474 aa)    
Predicted Functional Partners:
Rta_27130
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases-like protein.
  
 0.925
lldD
Candidate L-lactate dehydrogenase (Cytochrome).
  
 0.925
Rta_29390
Candidate bifunctional protein : L-lactate dehydrogenase;Citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
  
 0.925
Rta_37850
Bifunctional protein : malic enzyme; phosphate acetyltransferase (phosphotransacetylase)-like protein; Belongs to the malic enzymes family.
  
 
 0.920
pykA
Candidate pyruvate kinase II; Belongs to the pyruvate kinase family.
    
 0.909
ppsA
Candidate phosphoenolpyruvate synthase (Pyruvate,water dikinase); Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
 0.908
Rta_26940
Pyruvate dehydrogenase-like protein; Belongs to the TPP enzyme family.
   
 0.908
aceE
Candidate pyruvate dehydrogenase; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
 0.902
aceE-2
Candidate pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
 0.902
gloB
Candidate hydroxyacylglutathione hydrolase (Glyoxalase II); Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.902
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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