Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_01000Candidate membrane protein. (263 aa)    
Predicted Functional Partners:
Rta_02440
Conserved hypothetical protein.
  
     0.554
Rta_07160
Conserved hypothetical protein.
  
     0.543
Rta_16920
Candidate membrane protein.
  
     0.530
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
  
     0.511
Rta_01010
Candidate membrane protein.
       0.501
Rta_06430
Hypothetical protein.
  
     0.494
Rta_01350
Hypothetical protein.
  
     0.466
Rta_37840
Candidate membrane protein.
  
     0.465
Rta_04310
(FDH) (FALDH).
  
     0.461
Rta_07150
Conserved hypothetical protein.
  
     0.439
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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