Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_01040Esterase, Carbohydrate Esterase Family 1-like protein; Serine hydrolase involved in the detoxification of formaldehyde. (289 aa)    
Predicted Functional Partners:
adhC
Glutathione-dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.999
Rta_01070
Hypothetical protein.
 0.998
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
  
 
 0.914
fdhF
Candidate formate dehydrogenase large subunit (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.902
Rta_30590
Formate dehydrogenase (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide)-like protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.902
Rta_30480
Candidate formate dehydrogenase subunit C precursor.
     
  0.900
fdhB
Candidate formate dehydrogenase iron-sulfur subunit.
     
  0.900
Rta_04310
(FDH) (FALDH).
  
 
 0.552
Rta_01020
Candidate transporter.
       0.541
Rta_30410
Polyketide synthase-like protein.
  
 
 0.496
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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