Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_01100Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. (347 aa)    
Predicted Functional Partners:
Rta_06000
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.720
Rta_14000
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.713
Rta_29330
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.708
Rta_29350
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.703
Rta_30200
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.694
Rta_08610
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.688
Rta_27100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.676
Rta_01910
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.654
oxyR
Candidate transcriptional regulator OxyR; Hydrogen peroxide-inducible genes activator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.647
Rta_16600
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.646
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.