Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_01170Candidate Carbon monoxide dehydrogenase large chain. (780 aa)    
Predicted Functional Partners:
Rta_13370
Candidate carbon monoxide dehydrogenase small chain.
 
 0.990
Rta_03690
Candidate Xanthine dehydrogenase, iron-sulfur binding subunit.
 
 0.985
yagT-2
Candidate xanthine dehydrogenase yagT, iron-sulfur binding subunit.
 
 0.983
yagT
Candidate xanthine dehydrogenase yagT iron-sulfur binding subunit.
 
 0.958
Rta_11280
Candidate isoquinoline 1-oxidoreductase, alpha subunit.
 
 0.949
Rta_13390
Candidate carbon monoxide dehydrogenase medium chain.
 
 
 0.889
Rta_13420
Conserved hypothetical protein.
 
  
 0.787
Rta_13410
Conserved hypothetical protein.
 
   
 0.775
Rta_01180
Conserved hypothetical protein.
       0.741
Rta_13400
Conserved hypothetical protein.
 
     0.701
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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