Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dadACandidate D-amino acid dehydrogenase small subunit. (447 aa)    
Predicted Functional Partners:
dadA-2
Candidate D-amino acid dehydrogenase small subunit.
  
  
 
0.921
Rta_16440
Imidazole acetol- phosphate transaminase.
  
  
 0.912
Rta_05500
Candidate 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.908
dat
Candidate D-alanine aminotransferase.
     
 0.904
aspC
Aspartate transaminase.
     
 0.904
Rta_08970
Malate/L-lactate dehydrogenase-like protein; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.901
aatA
Candidate aspartate aminotransferase.
     
 0.901
hisC
Candidate Histidinol-phosphate aminotransferase 1; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.900
Rta_01200
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
 
     0.667
Rta_13730
Candidate sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor.
   
 
 0.520
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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