Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amtBCandidate ammonia permease. (491 aa)    
Predicted Functional Partners:
glnK
Candidate Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.999
glnB
Candidate nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.996
Rta_01430
Conserved hypothetical protein.
 
    0.791
Rta_14440
Candidate histidine kinase, classic.
 
 
 0.748
gltB
Candidate Ferredoxin-dependent glutamate synthase.
 
  
 0.736
Rta_26560
Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.
  
  
 0.528
gtlD
Candidate Glutamate synthase [NADPH] small chain.
 
  
 0.526
aspA
Candidate Aspartate ammonia-lyase.
   
  
 0.512
acnA
Candidate aconitase (aconitate hydratase).
  
  
 0.502
glnD
Uridylyl removing enzyme; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.
 
   
 0.497
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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