Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Rta_01520Conserved hypothetical protein. (329 aa)    
Predicted Functional Partners:
glcE
Candidate Glycolate oxidase subunit.
  
  
 0.657
gclF
Candidate Glycolate oxidase iron-sulfur subunit.
       0.621
Rta_01510
Hypothetical protein.
       0.567
Rta_11540
2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.457
glpK
ATP:glycerol 3-phosphotransferase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 
 0.425
Rta_11480
2-oxo-3-deoxygalactonate kinase.
 
     0.424
dalD
Candidate D-arabinitol 4-dehydrogenase.
 
   
 0.422
Rta_17720
Conserved hypothetical protein.
 
  
 0.421
Rta_01550
Conserved hypothetical protein.
       0.410
Rta_01560
Conserved hypothetical protein.
 
     0.409
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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