Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_01550Conserved hypothetical protein. (140 aa)    
Predicted Functional Partners:
Rta_27410
PhnB protein-like protein.
    0.903
Rta_09240
RNA polymerase sigma-24 factor-like protein; Belongs to the sigma-70 factor family.
 
    0.788
Rta_20800
RNA polymerase sigma-24 factor-like protein; Belongs to the sigma-70 factor family.
 
    0.779
Rta_14070
Hypothetical protein.
  
     0.732
Rta_01560
Conserved hypothetical protein.
       0.535
glcE
Candidate Glycolate oxidase subunit.
       0.522
gclF
Candidate Glycolate oxidase iron-sulfur subunit.
       0.522
Rta_01520
Conserved hypothetical protein.
       0.410
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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