Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_01590Candidate transporter. (314 aa)    
Predicted Functional Partners:
Rta_01600
Candidate transporter.
       0.802
Rta_01585
Candidate Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.780
alr2
Candidate Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.604
Rta_01620
Acetyltransferase-like protein.
       0.549
Rta_12080
Candidate membrane protein.
  
     0.477
Rta_22980
Conserved hypothetical protein.
  
     0.467
Rta_33770
Conserved hypothetical protein.
  
     0.446
Rta_35940
Membrane efflux protein-like protein.
  
    0.446
Rta_36340
Candidate membrane protein.
  
     0.432
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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